PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 520aa    MW: 56549.8 Da    PI: 5.3977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011198.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-2194196199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                  f+k+lt sd++  g +++p+++ae++        +++ +  tl++ d++g  W++ +iyr++++r++lt+GW++F+++++L +gD ++F   ++ s++
  Aco011198.1  94 FVKILTESDANCGGGFSVPRSCAEHIfpplnlaAEPPVQ--TLSISDLHGTAWKFCHIYRGTPRRHLLTTGWSKFAESKRLISGDAIIFV--KDkSNG 187
                  89*********************888****996555555..8************************************************..444999 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                   l+v+++r+
  Aco011198.1 188 DLFVGFRRA 196
                  99***9985 PP

2Auxin_resp67.25.4e-23243322183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa++a+ + +Fev+Y+P+a+ +eFvv+ ++v +a++v++ vGmR+ +++e+edss+ +   Gtv+ v +    r  +S+Wr+L+
  Aco011198.1 243 AARSADLGRPFEVLYYPKAGLPEFVVPEAEVDAAMRVPWKVGMRVTLSVEGEDSSTMHNvLGTVAEVAK----RGAKSPWRMLQ 322
                  677888999**********************************************998779******99....788******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-2888202IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-2094195No hitNo description
SMARTSM010198.8E-1394197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-2994195IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.95694197IPR003340B3 DNA binding domain
PfamPF023628.3E-1994195IPR003340B3 DNA binding domain
PfamPF065074.4E-19243322IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
PERRGPARVA GYFPEGHAEH AWYPPDLSAV LGGGGAPFFR CRVVGGRLLA NRRSDEVFSE  60
IRLDPSPSAA PTEEAAAAAW SGGGEGDDGG MAWFVKILTE SDANCGGGFS VPRSCAEHIF  120
PPLNLAAEPP VQTLSISDLH GTAWKFCHIY RGTPRRHLLT TGWSKFAESK RLISGDAIIF  180
VKDKSNGDLF VGFRRALRLF DADSPFLPFL AEIDPEEDER TISELGFSRC VRGRIPSANV  240
VEAARSADLG RPFEVLYYPK AGLPEFVVPE AEVDAAMRVP WKVGMRVTLS VEGEDSSTMH  300
NVLGTVAEVA KRGAKSPWRM LQVTWDEPEI MKNRGLNKVS PWQVEIVSST PALQTQYFET  360
PRLTKWKVLE KSGSLGDEQN WRVLENSGFL GDEQNSILNP EYKTVTSAVL QSPEHPAGMQ  420
GARQDLICFL PIKRNEVIGN SSSIDSTTQE VEIVRGEMNI ANISHSSSIH LCQEAMLNGG  480
SEPTSTSAFS QLKGVRTIAL FGQTIIIEQS PAGGGADKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-511234975392Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-85auxin response factor 16